Authentication
Login, logout, and session management for Seqera CLI
18 docs tagged with "cli"
View all tagsAutomation
An introduction to automation with APIs and CLI tools in Seqera Platform
Co-Scientist in the Seqera CLI
AI-powered assistant for bioinformatics workflows and Seqera Platform
Command approval
Control which local commands require user approval in Co-Scientist
Commands
Seqerakit command options
Get started
AI-powered assistant for bioinformatics workflows and Seqera Platform
Installation
Install and configure Co-Scientist CLI
Installation
Seqerakit installation options
Language server
Use language-server code intelligence features in Co-Scientist
Modes
Work in build mode, plan mode, and goal mode in Co-Scientist CLI
Skills
Discover, create, and install skills in Co-Scientist CLI
Templates
Seqerakit YAML configuration file templates and instructions
Use cases
Learn how to use Co-Scientist CLI for bioinformatics workflows, pipeline development, and data management
Working with Claude Code
Install and maintain the Co-Scientist skill for Claude Code
Working with Codex
Install and maintain the Co-Scientist skill for Codex
Working with GitHub Copilot
Install and maintain the Co-Scientist skill for GitHub Copilot
Working with other coding agents
Install and maintain the Co-Scientist skill for other coding agents
YAML configuration
seqerakit YAML configuration file options